You are querying gene by "AT1G09530".

Locus: AT1G09530 Alias: PAP3

Hormone Evidence Function category Gene Description PMID
gibberellinGeneOntology - gibberellic acid mediated signaling 18053005

Basic gene information ( show / hide contents )

Locus AT1G09530 | Chromosome: 1 | Strand: +
Description gibberellic acid mediated signaling
PAP3( alias )
PIF3( alias )
POC1( alias )
Gene model
AT1G09530.1 | From: 3076584 | To: 3079541
AT1G09530.2 | From: 3076604 | To: 3079541
AT1G09530.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G09530.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
DNA binding PMID: 17319847
protein binding PMID: 12826627
transcription regulator activity PMID: 9845368
transcription factor activity PMID: 11118137
nucleus PMID: 9845368
red or far red light signaling pathway PMID: 10318970
positive regulation of anthocyanin metabolic process PMID: 17319847
signal transduction PMID: 9845368
gibberellic acid mediated signaling PMID: 18053005
response to red or far red light PMID: 10318970
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

Hormone treatment related datasets  
Abiotic stress treatment related datasets (in root)  
Abiotic stress treatment related datasets (in shoot)  
Development related datasets  

miRNA interaction information for this gene

(Note:target use cDNA sequence)
target: AT1G09530.1 
length: 1957 
miRNA : ath-miR837-5p
length: 21 
mfe: -21.7 kcal/mol 
p-value: 0.106286 
position  1021 
target 5' A    A  C       G   A 
           GAAA GA CAAGAGA UGA  
           CUUU CU GUUCUUU ACU  
miRNA  3' A    G  U       G   A 
target: AT1G09530.2 
length: 1997 
miRNA : ath-miR837-5p
length: 21 
mfe: -21.7 kcal/mol 
p-value: 0.108111 
position  1061 
target 5' A    A  C       G   A 
           GAAA GA CAAGAGA UGA  
           CUUU CU GUUCUUU ACU  
miRNA  3' A    G  U       G   A 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_26929
NP_001042775Oryza sativa Japonica Group
NP_172424Arabidopsis thaliana
NP_849626 ( AT1G09530 )Arabidopsis thaliana
30128.m008988Ricinus communis
estExt_fgenesh1_pg.C_690022Physcomitrella patens subsp. patens
NP_001054593Oryza sativa Japonica Group
estExt_fgenesh1_pg.C_680048Physcomitrella patens subsp. patens
153934Chlamydomonas reinhardtii
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA: DNA-binding
SuperFamilySSF474596.7E-20339423IPR011598Helix-loop-helix DNA-binding
PROSITEPS508880.0340393IPR001092Helix-loop-helix DNA-binding domain
PfamPF000101.7000000000000003E-11347393IPR001092Helix-loop-helix DNA-binding domain
SMARTSM003534.1999977133958055E-18349398IPR001092Helix-loop-helix DNA-binding domain