You are querying gene by "AT1G09530".

Locus: AT1G09530 Alias: PAP3

Hormone Evidence Function category Gene Description PMID
gibberellinGeneOntology - gibberellic acid mediated signaling 18053005

Basic gene information ( show / hide contents )

Locus AT1G09530 | Chromosome: 1 | Strand: +
Description gibberellic acid mediated signaling
Alias
PAP3( alias )
PIF3( alias )
POC1( alias )
Gene model
AT1G09530.1 | From: 3076584 | To: 3079541
AT1G09530.2 | From: 3076604 | To: 3079541
Sequence
AT1G09530.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G09530.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID: 17319847
protein binding PMID: 12826627
transcription regulator activity PMID: 9845368
transcription factor activity PMID: 11118137
cellular_component
nucleus PMID: 9845368
biological_process
red or far red light signaling pathway PMID: 10318970
positive regulation of anthocyanin metabolic process PMID: 17319847
signal transduction PMID: 9845368
gibberellic acid mediated signaling PMID: 18053005
response to red or far red light PMID: 10318970
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G09530.1 
length: 1957 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -21.7 kcal/mol 
p-value: 0.106286 
 
position  1021 
target 5' A    A  C       G   A 
           GAAA GA CAAGAGA UGA  
           CUUU CU GUUCUUU ACU  
miRNA  3' A    G  U       G   A 
 
 
target: AT1G09530.2 
length: 1997 
miRNA : ath-miR837-5p
length: 21 
 
mfe: -21.7 kcal/mol 
p-value: 0.108111 
 
position  1061 
target 5' A    A  C       G   A 
           GAAA GA CAAGAGA UGA  
           CUUU CU GUUCUUU ACU  
miRNA  3' A    G  U       G   A 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_26929
AccessionTaxon
NP_001042775Oryza sativa Japonica Group
NP_172424Arabidopsis thaliana
NP_849626 ( AT1G09530 )Arabidopsis thaliana
30128.m008988Ricinus communis
estExt_fgenesh1_pg.C_690022Physcomitrella patens subsp. patens
NP_001054593Oryza sativa Japonica Group
estExt_fgenesh1_pg.C_680048Physcomitrella patens subsp. patens
153934Chlamydomonas reinhardtii
DatabaseEntry IDE-valueStartEndInterPro IDDescription
Gene3DG3DSA:4.10.280.104.600000443308659E-8339402IPR011598Helix-loop-helix DNA-binding
SuperFamilySSF474596.7E-20339423IPR011598Helix-loop-helix DNA-binding
PROSITEPS508880.0340393IPR001092Helix-loop-helix DNA-binding domain
PfamPF000101.7000000000000003E-11347393IPR001092Helix-loop-helix DNA-binding domain
SMARTSM003534.1999977133958055E-18349398IPR001092Helix-loop-helix DNA-binding domain