You are querying gene by "AT1G08260".

Locus: AT1G08260 Alias: EMB2284

Hormone Evidence Function category Gene Description PMID
abscisic acidMutant Hormone signal transduction Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells. 19244142

Basic gene information ( show / hide contents )

Locus AT1G08260 | Chromosome: 1 | Strand: +
Description Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.
Alias
EMB2284( alias )
EMB529( alias )
POL2A( alias )
TIL1( alias )
Gene model
AT1G08260.1 | From: 2590941 | To: 2606889
Sequence
AT1G08260.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA-directed DNA polymerase activity PMID:
cellular_component
epsilon DNA polymerase complex PMID: 16212602
biological_process
positive regulation of S phase of mitotic cell cycle PMID: 16278345
embryonic development ending in seed dormancy PMID:
KEGG pathway This gene participates in 1 pathways:
Pathway Enzyme
DNA polymerase DNA polymerase epsilon, subunit A
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   abscisic acid   ]

Genotype PMID Type
abo4-1 19244142 mutant
abo4-2 19244142 mutant
abo4-1 abo4-2 19244142 mutant
abo4-1 abi1-1 19244142 mutant
abo4-2 abi1-1 19244142 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G08260.1 
length: 6810 
miRNA : ath-miR172a
length: 21 
 
mfe: -23.8 kcal/mol 
p-value: 0.127003 
 
position  3314 
target 5' G    A  A            G  G 
           GUGC AG CAUCAUCA GAU UC  
           UACG UC GUAGUAGU CUA AG  
miRNA  3'                  U      A 
 
 
target: AT1G08260.1 
length: 6810 
miRNA : ath-miR172b
length: 21 
 
mfe: -23.8 kcal/mol 
p-value: 0.139843 
 
position  3314 
target 5' G    A  A            G  G 
           GUGC AG CAUCAUCA GAU UC  
           UACG UC GUAGUAGU CUA AG  
miRNA  3'                  U      A 
 
 
target: AT1G08260.1 
length: 6810 
miRNA : ath-miR403
length: 21 
 
mfe: -23.3 kcal/mol 
p-value: 0.067157 
 
position  1917 
target 5' A                 G   C 
           UGGGUUUG GCGUG GU UGA  
           GCUCAAAC CGCAC UA AUU  
miRNA  3'          A     U  G     
 
 
target: AT1G08260.1 
length: 6810 
miRNA : ath-miR847
length: 21 
 
mfe: -31.5 kcal/mol 
p-value: 0.014388 
 
position  3886 
target 5' G    G           U    G 
           GUCA GGAAGAGGAGG GUGG  
           UAGU UCUUCUUCUCC CACU  
miRNA  3' G                U      
 
 
target: AT1G08260.2 
length: 6438 
miRNA : ath-miR172a
length: 21 
 
mfe: -23.8 kcal/mol 
p-value: 0.121396 
 
position  3197 
target 5' G    A  A            G  G 
           GUGC AG CAUCAUCA GAU UC  
           UACG UC GUAGUAGU CUA AG  
miRNA  3'                  U      A 
 
 
target: AT1G08260.2 
length: 6438 
miRNA : ath-miR172a
length: 21 
 
mfe: -25.2 kcal/mol 
p-value: 0.068551 
 
position  4034 
target 5' C  A     G           A 
           UG GGCAU UGUCAAGAUUC  
           AC UCGUA GUAGUUCUAAG  
miRNA  3' U  G                 A 
 
 
target: AT1G08260.2 
length: 6438 
miRNA : ath-miR172b
length: 21 
 
mfe: -23.8 kcal/mol 
p-value: 0.133352 
 
position  3197 
target 5' G    A  A            G  G 
           GUGC AG CAUCAUCA GAU UC  
           UACG UC GUAGUAGU CUA AG  
miRNA  3'                  U      A 
 
 
target: AT1G08260.2 
length: 6438 
miRNA : ath-miR172b
length: 21 
 
mfe: -25.2 kcal/mol 
p-value: 0.072944 
 
position  4034 
target 5' C  A     G           A 
           UG GGCAU UGUCAAGAUUC  
           AC UCGUA GUAGUUCUAAG  
miRNA  3' U  G                 A 
 
 
target: AT1G08260.2 
length: 6438 
miRNA : ath-miR172c
length: 21 
 
mfe: -27.1 kcal/mol 
p-value: 0.040241 
 
position  4033 
target 5' A   A     G           A 
           CUG GGCAU UGUCAAGAUUC  
           GAC UCGUA GUAGUUCUAAG  
miRNA  3'     G                 A 
 
 
target: AT1G08260.2 
length: 6438 
miRNA : ath-miR172d
length: 21 
 
mfe: -27.1 kcal/mol 
p-value: 0.037256 
 
position  4033 
target 5' A   A     G           A 
           CUG GGCAU UGUCAAGAUUC  
           GAC UCGUA GUAGUUCUAAG  
miRNA  3'     G                 A 
 
 
target: AT1G08260.2 
length: 6438 
miRNA : ath-miR172e
length: 21 
 
mfe: -25.0 kcal/mol 
p-value: 0.126660 
 
position  4034 
target 5' C  A     G           A 
           UG GGCAU UGUCAAGAUUC  
           AC UCGUA GUAGUUCUAAG  
miRNA  3' U  G                 G 
 
 
target: AT1G08260.2 
length: 6438 
miRNA : ath-miR403
length: 21 
 
mfe: -23.3 kcal/mol 
p-value: 0.063363 
 
position  1866 
target 5' A                 G   C 
           UGGGUUUG GCGUG GU UGA  
           GCUCAAAC CGCAC UA AUU  
miRNA  3'          A     U  G     
 
 
target: AT1G08260.2 
length: 6438 
miRNA : ath-miR847
length: 21 
 
mfe: -31.5 kcal/mol 
p-value: 0.013793 
 
position  3769 
target 5' G    G           U    G 
           GUCA GGAAGAGGAGG GUGG  
           UAGU UCUUCUUCUCC CACU  
miRNA  3' G                U      
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11276
AccessionTaxon
NP_001117247Arabidopsis thaliana
NP_172303 ( AT1G08260 )Arabidopsis thaliana
NP_180280Arabidopsis thaliana
9481Chlamydomonas reinhardtii
NP_001046939Oryza sativa Japonica Group
gw1.11.00.10.1Ostreococcus tauri
e_gw1.133.8.1Physcomitrella patens subsp. patens
29791.m000536Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF530989.6e-8250471IPR012337Polynucleotidyl transferase, ribonuclease H fold
SuperFamilySSF530983.3999997243768744E-8250468IPR012337Polynucleotidyl transferase, ribonuclease H fold
PfamPF031047.6e-7674403IPR006133DNA-directed DNA polymerase, family B, exonuclease domain
PfamPF031044.199999999999995E-7374400IPR006133DNA-directed DNA polymerase, family B, exonuclease domain
SMARTSM004865.5e-64239842IPR022762DNA polymerase, family B
SMARTSM004862.5000090991618295E-72239825IPR022762DNA polymerase, family B
PfamPF001361.3999999999999998E-215781051IPR006134DNA-directed DNA polymerase, family B, conserved region
PfamPF001363.7e-225901090IPR006134DNA-directed DNA polymerase, family B, conserved region
PfamPF084905.800000000000036E-12914891856IPR013697Domain of unknown function DUF1744
PfamPF084901e-11715291878IPR013697Domain of unknown function DUF1744