You are querying gene by "AT1G07640".

Locus: AT1G07640 Alias: OBP2

Hormone Evidence Function category Gene Description PMID
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16740150

Basic gene information ( show / hide contents )

Locus AT1G07640 | Chromosome: 1 | Strand: -
Description response to jasmonic acid stimulus
Alias
OBP2( alias )
Gene model
AT1G07640.2 | From: 2354351 | To: 2355984
AT1G07640.1 | From: 2354351 | To: 2355768
AT1G07640.3 | From: 2354351 | To: 2356224
Sequence
AT1G07640.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G07640.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G07640.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 12475498
cellular_component
nucleus PMID: 16581911
biological_process
response to wounding PMID: 16740150
glucosinolate biosynthetic process PMID: 16740150
response to jasmonic acid stimulus PMID: 16740150
response to insect PMID: 16740150
regulation of transcription PMID: 11118137
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

No genetic evidence yet supported that this is a hormone-related gene.

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G07640.1 
length: 1418 
miRNA : ath-miR398a
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.011376 
 
position  407 
target 5' A      C C            U 
           AGGGGG G CCUGAGAA ACG  
           UUCCCC C GGACUCUU UGU  
miRNA  3'        A U        G     
 
 
target: AT1G07640.1 
length: 1418 
miRNA : ath-miR398b
length: 21 
 
mfe: -29.2 kcal/mol 
p-value: 0.008366 
 
position  408 
target 5' A     C C            U 
           GGGGG G CCUGAGAA ACG  
           UCCCC C GGACUCUU UGU  
miRNA  3' G     A U        G     
 
 
target: AT1G07640.1 
length: 1418 
miRNA : ath-miR398c
length: 21 
 
mfe: -29.2 kcal/mol 
p-value: 0.008634 
 
position  408 
target 5' A     C C            U 
           GGGGG G CCUGAGAA ACG  
           UCCCC C GGACUCUU UGU  
miRNA  3' G     A U        G     
 
 
target: AT1G07640.2 
length: 1538 
miRNA : ath-miR398a
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.012278 
 
position  527 
target 5' A      C C            U 
           AGGGGG G CCUGAGAA ACG  
           UUCCCC C GGACUCUU UGU  
miRNA  3'        A U        G     
 
 
target: AT1G07640.2 
length: 1538 
miRNA : ath-miR398b
length: 21 
 
mfe: -29.2 kcal/mol 
p-value: 0.009176 
 
position  528 
target 5' A     C C            U 
           GGGGG G CCUGAGAA ACG  
           UCCCC C GGACUCUU UGU  
miRNA  3' G     A U        G     
 
 
target: AT1G07640.2 
length: 1538 
miRNA : ath-miR398c
length: 21 
 
mfe: -29.2 kcal/mol 
p-value: 0.009453 
 
position  528 
target 5' A     C C            U 
           GGGGG G CCUGAGAA ACG  
           UCCCC C GGACUCUU UGU  
miRNA  3' G     A U        G     
 
 
target: AT1G07640.3 
length: 1588 
miRNA : ath-miR398a
length: 21 
 
mfe: -29.1 kcal/mol 
p-value: 0.012648 
 
position  577 
target 5' A      C C            U 
           AGGGGG G CCUGAGAA ACG  
           UUCCCC C GGACUCUU UGU  
miRNA  3'        A U        G     
 
 
target: AT1G07640.3 
length: 1588 
miRNA : ath-miR398b
length: 21 
 
mfe: -29.2 kcal/mol 
p-value: 0.009513 
 
position  578 
target 5' A     C C            U 
           GGGGG G CCUGAGAA ACG  
           UCCCC C GGACUCUU UGU  
miRNA  3' G     A U        G     
 
 
target: AT1G07640.3 
length: 1588 
miRNA : ath-miR398c
length: 21 
 
mfe: -29.2 kcal/mol 
p-value: 0.009793 
 
position  578 
target 5' A     C C            U 
           GGGGG G CCUGAGAA ACG  
           UCCCC C GGACUCUU UGU  
miRNA  3' G     A U        G     
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_58132
AccessionTaxon
NP_001030988Arabidopsis thaliana
NP_563792Arabidopsis thaliana
NP_850126Arabidopsis thaliana
NP_850938 ( AT1G07640 )Arabidopsis thaliana
DatabaseEntry IDE-valueStartEndInterPro IDDescription
ProDomPD0074780.0372IPR003851Zinc finger, Dof-type
PfamPF027014.500000000000003E-332176IPR003851Zinc finger, Dof-type
PROSITEPS508840.02175IPR003851Zinc finger, Dof-type
PROSITEPS013610.02359IPR003851Zinc finger, Dof-type
ProDomPD0074780.067136IPR003851Zinc finger, Dof-type
PfamPF027017.8e-3677132IPR003851Zinc finger, Dof-type
PROSITEPS5088429.62777131IPR003851Zinc finger, Dof-type
PROSITEPS01361NA79115IPR003851Zinc finger, Dof-type
PfamPF027016.400000000000042E-3385140IPR003851Zinc finger, Dof-type
PROSITEPS508840.085139IPR003851Zinc finger, Dof-type
PROSITEPS013610.087123IPR003851Zinc finger, Dof-type