You are querying gene by "AT1G05180".

Locus: AT1G05180 Alias: AXR1

Hormone Evidence Function category Gene Description PMID
auxinMutant Hormone signal transduction ubiquitin-like activating enzyme 1983791 11884684 7704045
GeneOntology - auxin mediated signaling pathway 7658471
jasmonic acidMutant Hormone signal transduction Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses.It is also involved in MeJA response. 12376653

Basic gene information ( show / hide contents )

Locus AT1G05180 | Chromosome: 1 | Strand: -
Description ubiquitin-like activating enzyme
Alias
AXR1( alias )
Gene model
AT1G05180.2 | From: 1498113 | To: 1501823
AT1G05180.1 | From: 1498113 | To: 1501823
AT1G05180.3 | From: 1498113 | To: 1501823
Sequence
AT1G05180.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G05180.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G05180.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
small protein activating enzyme activity PMID:
cellular_component
nucleus PMID: 9624055
biological_process
response to water deprivation PMID: 8979397
auxin homeostasis PMID: 17655650
protein ubiquitination PMID: 17655650
auxin mediated signaling pathway PMID: 7658471
leaf morphogenesis PMID: 16971475
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

  auxin     jasmonic acid  

[   auxin   ]

Genotype PMID Type
axr1-12 eta2-1 15208392 mutant
axr1 1983791 mutant
axr1-12 ECR1-C1 11884684 mutant
axr4-1 axr1-12 7704045 mutant
prz1-1 axr1-3 12747832 mutant

[   jasmonic acid   ]

Genotype PMID Type
axr1-24 12376653 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G05180.1 
length: 1915 
miRNA : ath-miR167d
length: 22 
 
mfe: -29.7 kcal/mol 
p-value: 0.009411 
 
position  232 
target 5' A  U   G           A   C 
           CU GGU GUGUUGGUAGC UCA  
           GG CUA UACGACCGUCG AGU  
miRNA  3'    U   G           A     
 
 
target: AT1G05180.1 
length: 1915 
miRNA : ath-miR1888
length: 21 
 
mfe: -19.9 kcal/mol 
p-value: 0.077942 
 
position  1816 
target 5' A      A            U 
           UCUUCG AAAUCUU GCUU  
           AGAAGU UUUAGAA UGAA  
miRNA  3' A      G       U    U 
 
 
target: AT1G05180.2 
length: 1817 
miRNA : ath-miR167d
length: 22 
 
mfe: -29.7 kcal/mol 
p-value: 0.008859 
 
position  232 
target 5' A  U   G           A   C 
           CU GGU GUGUUGGUAGC UCA  
           GG CUA UACGACCGUCG AGU  
miRNA  3'    U   G           A     
 
 
target: AT1G05180.2 
length: 1817 
miRNA : ath-miR1888
length: 21 
 
mfe: -19.9 kcal/mol 
p-value: 0.073651 
 
position  1718 
target 5' A      A            U 
           UCUUCG AAAUCUU GCUU  
           AGAAGU UUUAGAA UGAA  
miRNA  3' A      G       U    U 
 
 
target: AT1G05180.3 
length: 1942 
miRNA : ath-miR167d
length: 22 
 
mfe: -29.7 kcal/mol 
p-value: 0.009563 
 
position  232 
target 5' A  U   G           A   C 
           CU GGU GUGUUGGUAGC UCA  
           GG CUA UACGACCGUCG AGU  
miRNA  3'    U   G           A     
 
 
target: AT1G05180.3 
length: 1942 
miRNA : ath-miR1888
length: 21 
 
mfe: -19.9 kcal/mol 
p-value: 0.079118 
 
position  1843 
target 5' A      A            U 
           UCUUCG AAAUCUU GCUU  
           AGAAGU UUUAGAA UGAA  
miRNA  3' A      G       U    U 
 
 
Gene1Gene2Positive/NegativeCategoryEnzyme activityEvidencePMID
AT1G05180AT1G14920negativeotherN/Amolecular1261625
AT1G05180AT1G66350negativeotherN/Amolecular1261625
AT1G05180AT2G01570negativeotherN/Amolecular1261625
AT1G05180AT3G03450negativeotherN/Amolecular1261625
AT1G05180AT5G17490negativeotherN/Amolecular1261625
AT1G05180AT5G24770PositiveotherN/Amolecular12376653
AT1G05180AT5G24780PositiveotherN/Amolecular12376653
AT1G05180AT5G42650PositiveotherN/Amolecular12376653
AT1G05180DRZ1negativeotherN/Amolecular12747832

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_11881
AccessionTaxon
NP_001030970Arabidopsis thaliana
NP_001031465Arabidopsis thaliana
NP_172010 ( AT1G05180 )Arabidopsis thaliana
NP_180800Arabidopsis thaliana
NP_973761Arabidopsis thaliana
178700Chlamydomonas reinhardtii
NP_001051717Oryza sativa Japonica Group
0100010075Ostreococcus tauri
estExt_Genewise1.C_790210Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_840203Physcomitrella patens subsp. patens
29600.m000552Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF695721.7e-12417540IPR009036Molybdenum cofactor biosynthesis, MoeB
Gene3DG3DSA:3.40.50.7201.8e-7223533IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7202.10000267834025E-2830429IPR016040NAD(P)-binding domain
SuperFamilySSF695723.2E-7830436IPR009036Molybdenum cofactor biosynthesis, MoeB
Gene3DG3DSA:3.40.50.7201.2000011745813983E-2130410IPR016040NAD(P)-binding domain
SuperFamilySSF695725.4E-7030410IPR009036Molybdenum cofactor biosynthesis, MoeB
PfamPF008993e-1341173IPR000594UBA/THIF-type NAD/FAD binding fold