You are querying gene by "AT1G01060".

Locus: AT1G01060 Alias: LHY

Hormone Evidence Function category Gene Description PMID
salicylic acidGeneOntology - response to salicylic acid stimulus 16463103
ethyleneGeneOntology - response to ethylene stimulus 16463103
abscisic acidGeneOntology - response to abscisic acid stimulus 16463103
auxinGeneOntology - response to auxin stimulus 16463103
gibberellinMutant Hormone signal transduction LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 16463103
GeneOntology - response to gibberellin stimulus 16463103
jasmonic acidGeneOntology - response to jasmonic acid stimulus 16463103

Basic gene information ( show / hide contents )

Locus AT1G01060 | Chromosome: 1 | Strand: -
Description response to auxin stimulus
Alias
LHY( alias )
LHY1( alias )
Gene model
AT1G01060.1 | From: 33666 | To: 37840
AT1G01060.2 | From: 33666 | To: 37780
AT1G01060.3 | From: 33379 | To: 37757
AT1G01060.4 | From: 33666 | To: 37780
Sequence
AT1G01060.1 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G01060.2 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G01060.3 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
AT1G01060.4 | Genomic | cDNA | CDS | Protein | Upstream 1K | Downstream 1K
Gene Ontology
molecular_function
DNA binding PMID:
transcription factor activity PMID: 9657154
biological_process
response to auxin stimulus PMID: 16463103
response to jasmonic acid stimulus PMID: 16463103
response to gibberellin stimulus PMID: 16463103
response to ethylene stimulus PMID: 16463103
response to abscisic acid stimulus PMID: 16463103
regulation of circadian rhythm PMID: 0012007421
response to salicylic acid stimulus PMID: 16463103
response to cadmium ion PMID: 16463103
response to salt stress PMID: 16463103
regulation of transcription PMID: 11118137
KEGG pathway No data
PPI Get protein-protein interactions by Arabidopsis Interactions Viewer

Hormone-related mutants or transgenic plants associated with this gene

[   gibberellin   ]

Genotype PMID Type
lhy cca1 19542296 mutant

Microarray data for this gene

  1  
Hormone treatment related datasets  
  2  
Abiotic stress treatment related datasets (in root)  
  3  
Abiotic stress treatment related datasets (in shoot)  
  4  
Development related datasets  

miRNA interaction information for this gene

Detail
(Note:target use cDNA sequence)
target: AT1G01060.1 
length: 2704 
miRNA : ath-miR169d
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.014551 
 
position  1831 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.1 
length: 2704 
miRNA : ath-miR169e
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.010878 
 
position  1831 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.1 
length: 2704 
miRNA : ath-miR169f
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.014413 
 
position  1831 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.1 
length: 2704 
miRNA : ath-miR169g
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.013465 
 
position  1831 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.2 
length: 2814 
miRNA : ath-miR169d
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.015186 
 
position  1941 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.2 
length: 2814 
miRNA : ath-miR169e
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.011335 
 
position  1941 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.2 
length: 2814 
miRNA : ath-miR169f
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.015033 
 
position  1941 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.2 
length: 2814 
miRNA : ath-miR169g
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.014023 
 
position  1941 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.3 
length: 2517 
miRNA : ath-miR169d
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.013465 
 
position  1748 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.3 
length: 2517 
miRNA : ath-miR169e
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.010094 
 
position  1748 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.3 
length: 2517 
miRNA : ath-miR169f
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.013350 
 
position  1748 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.3 
length: 2517 
miRNA : ath-miR169g
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.012506 
 
position  1748 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.4 
length: 2641 
miRNA : ath-miR169d
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.014186 
 
position  1768 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.4 
length: 2641 
miRNA : ath-miR169e
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.010614 
 
position  1768 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.4 
length: 2641 
miRNA : ath-miR169f
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.014056 
 
position  1768 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 
target: AT1G01060.4 
length: 2641 
miRNA : ath-miR169g
length: 21 
 
mfe: -28.5 kcal/mol 
p-value: 0.013143 
 
position  1768 
target 5' U  A C C       G       A 
           GG C G UCAUCCU UGGCUCA  
           CC G U AGUAGGA ACCGAGU  
miRNA  3' G    U C                 
 
 

No related Gene interaction information for this gene.

Ortholog Groups annotation for this gene

Ortholog Groups : OG4_45015
AccessionTaxon
NP_001030924 ( AT1G01060 )Arabidopsis thaliana
NP_001077437Arabidopsis thaliana
NP_171614Arabidopsis thaliana
NP_849568Arabidopsis thaliana
NP_001061032Oryza sativa Japonica Group
30076.m004464Ricinus communis
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SuperFamilySSF466894.8e-161876IPR009057Homeodomain-like
SuperFamilySSF466894.8E-161876IPR009057Homeodomain-like
PROSITEPS5129419.9771973IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
PROSITEPS512940.01973IPR017930HTH transcriptional regulator, Myb-type, DNA-binding
TIGRFAMTIGR015573.2e-252272IPR006447Myb-like DNA-binding domain, SHAQKYF class
TIGRFAMTIGR015571.7999975402237506E-212272IPR006447Myb-like DNA-binding domain, SHAQKYF class
SMARTSM007172.4e-122371IPR001005SANT, DNA-binding
SMARTSM007171.3999989204987805E-122371IPR001005SANT, DNA-binding
PfamPF002491e-132468IPR014778Myb, DNA-binding
PfamPF002498.000000000000007E-112468IPR014778Myb, DNA-binding